From 5ecf7b36c5ca1e5964dd29f6e55171dce305dc0c Mon Sep 17 00:00:00 2001 From: KHAM Chaimae <k24022051@V-PJ-47-085.salsa.univ-amu.fr> Date: Wed, 23 Oct 2024 15:19:15 +0200 Subject: [PATCH] workflow --- workflow/makefile | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 workflow/makefile diff --git a/workflow/makefile b/workflow/makefile new file mode 100644 index 0000000..c863e10 --- /dev/null +++ b/workflow/makefile @@ -0,0 +1,20 @@ +all: results/tp4/TP4_asbvg.RData + +results/tp4/TP4_asbvg.RData: results/tp3/TP3_asbvg.RData + Rscript src/tp4.R + +results/tp3/TP3_asbvg.RData: results/tp2/TP2_asbvg.RData + Rscript src/tp3.R + +results/tp2/TP2_asbvg.RData: results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData + Rscript src/tp2.R + +results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData: results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam + Rscript src/tp1.R + +results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam: + Rscript src/download_data.R + +clean: + rm -rf results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam results/data/penncath.csv results/penncath.tar.gz results/data + -- GitLab