From 9ed68dcccab7cf99829e0431af8c6f35677ec950 Mon Sep 17 00:00:00 2001
From: KHAM Chaimae <k24022051@V-PP-47-L-003.salsa.univ-amu.fr>
Date: Mon, 28 Oct 2024 13:45:10 +0100
Subject: [PATCH] modification de fichiers
---
src/tp1.R | 17 ++---------------
1 file changed, 2 insertions(+), 15 deletions(-)
diff --git a/src/tp1.R b/src/tp1.R
index 44b14f3..d3c8fa1 100644
--- a/src/tp1.R
+++ b/src/tp1.R
@@ -2,21 +2,6 @@ options(repos = c(CRAN = "https://cloud.r-project.org"))
output_dir = "results/tp1"
dir.create(output_dir, showWarnings = F, recursive = T)
-# if (!require("BiocManager", quietly = TRUE))
-# install.packages("BiocManager")
-
-#if (!require("snpStats", quietly = TRUE))
-# BiocManager::install("snpStats")
-
-#if (!require("SNPRelate", quietly = TRUE))
-#BiocManager::install("SNPRelate")
-
-# Charger les bibliothèques
-#library(snpStats)
-#library(SNPRelate)
-#library(devtools)
-#library(plyr)
-
# Les données analysées nécessitant beaucoup de RAM, nous allons sélectionner aléatoirement 250000 SNPs et réecrire des fichiers bed, bim, fam
penncath_bed_path = "results/data/penncath.bed"
penncath_bim_path = "results/data/penncath.bim"
@@ -43,3 +28,5 @@ rm(geno)
rdata_path = file.path(output_dir, "TP1_asbvg.RData")
save.image(rdata_path)
+
+
--
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