diff --git a/workflow/README.md b/workflow/README.md index 77ea7df7c3aa8604568b46e7659a5d74770f55e0..a3c41a0b5df52b91d5566dbecf291dfaee4f3b91 100644 --- a/workflow/README.md +++ b/workflow/README.md @@ -1,16 +1,16 @@ This Makefile orchestrates a sequence of R scripts to process data and generate output files. It ensures that each step is executed in the correct order by specifying dependencies between the files. -#File Dependencies: +# File Dependencies: Each target file is dependent on one or more source files. For example, results/tp4/TP4_asbvg.RData depends on results/tp3/TP3_asbvg.RData. -#R Script Execution: +# R Script Execution: For each target file, an associated R script is run using Rscript. The scripts are executed in sequence, ensuring that the necessary input files are generated before the next step. -#Data Download: +# Data Download: The first step downloads the necessary data files (penncath.bed, penncath.bim, penncath.fam) using the src/download_data.R script. -#Data Processing: +# Data Processing: After the data is downloaded, subsequent R scripts (src/tp1.R, src/tp2.R, src/tp3.R, and src/tp4.R) process the data and produce intermediate and final results (stored in .RData files).