From e2887832b78da7d302dc310a4b6ee5038ba19b8a Mon Sep 17 00:00:00 2001
From: KHAM Chaimae <k24022051@V-PP-47-L-003.salsa.univ-amu.fr>
Date: Mon, 28 Oct 2024 13:51:20 +0100
Subject: [PATCH] suppression de fichier
---
tp1.R | 23 -----------------------
1 file changed, 23 deletions(-)
delete mode 100644 tp1.R
diff --git a/tp1.R b/tp1.R
deleted file mode 100644
index 5cc42e9..0000000
--- a/tp1.R
+++ /dev/null
@@ -1,23 +0,0 @@
-wdir="."
-dir.create(<dir, showWarnings = F, recursive = T)
-setwd(wdir)
-
-#library(devtools)
-
-if (!require("BiocManager", quietly = TRUE))
- install.packages("BiocManager")
-
-if (!require("snpStats", quietly = TRUE))
- BiocManager::install("snpStats")
-
-if (!require("SNPRelate", quietly = TRUE))
- BiocManager::install("SNPRelate")
-
-# Les données analysées nécessitant beaucoup de RAM, nous allons sélectionner aléatoirement 250000 SNPs et réecrire des fichiers bed, bim, fam
-penncath_bed_path = "results/data/penncath.bed"
-penncath_bim_path = "results/data/penncath.bim"
-penncath_fam_path = "results/data/penncath.fam"
-geno <- snpStats::read.plink(penncath_bed_path, penncath_bim_path, penncath_fam_path, select.snps=sample(1:861473, 25000, replace = FALSE ), na.strings = ("-9"))
-
-
-
--
GitLab