diff --git a/tp1.R b/tp1.R index 3a665572add184254bbe1f60a8308254813e6ffd..5cc42e9223874b31cf894c9869c6f690760591da 100644 --- a/tp1.R +++ b/tp1.R @@ -1,7 +1,7 @@ wdir="." -dir.create(wdir, showWarnings = F, recursive = T) +dir.create(<dir, showWarnings = F, recursive = T) setwd(wdir) - + #library(devtools) if (!require("BiocManager", quietly = TRUE)) @@ -13,3 +13,11 @@ if (!require("snpStats", quietly = TRUE)) if (!require("SNPRelate", quietly = TRUE)) BiocManager::install("SNPRelate") +# Les données analysées nécessitant beaucoup de RAM, nous allons sélectionner aléatoirement 250000 SNPs et réecrire des fichiers bed, bim, fam +penncath_bed_path = "results/data/penncath.bed" +penncath_bim_path = "results/data/penncath.bim" +penncath_fam_path = "results/data/penncath.fam" +geno <- snpStats::read.plink(penncath_bed_path, penncath_bim_path, penncath_fam_path, select.snps=sample(1:861473, 25000, replace = FALSE ), na.strings = ("-9")) + + +