diff --git a/workflows/makefile.v2 b/workflows/makefile.v2 new file mode 100644 index 0000000000000000000000000000000000000000..c863e10dc5a53f5d688f1bd12ec07ba1ea1e948c --- /dev/null +++ b/workflows/makefile.v2 @@ -0,0 +1,20 @@ +all: results/tp4/TP4_asbvg.RData + +results/tp4/TP4_asbvg.RData: results/tp3/TP3_asbvg.RData + Rscript src/tp4.R + +results/tp3/TP3_asbvg.RData: results/tp2/TP2_asbvg.RData + Rscript src/tp3.R + +results/tp2/TP2_asbvg.RData: results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData + Rscript src/tp2.R + +results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData: results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam + Rscript src/tp1.R + +results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam: + Rscript src/download_data.R + +clean: + rm -rf results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam results/data/penncath.csv results/penncath.tar.gz results/data +