Download Clone

mkdir m2bsgreprod

git clone git@etulab.univ-amu.fr:o22025448/tp1ara.git > m2bsgreprod

Install the micromamba or equiv.

Create a m2bsgreprod micromamba environment and install apptainer 1.3.2

Build the apptainer image

mkdir -p results/containers

sudo /home/gonzalez/Software/micromamba/envs/m2bsgreprod/bin/apptainer build results/containers/m2bsgreprod.sif containers/m2bsgreprod.def

Execute the Rscripts

micromamba activate m2bsgreprod

apptainer exec results/containers/m2bsgreprod.sif Rscript src/download_data.R

apptainer exec results/containers/m2bsgreprod.sif Rscript src/tp1.R

make -f workflows/