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tp1ara

  • Clone with SSH
  • Clone with HTTPS
  • user avatar
    OTT Oceane authored
    ee4e02c8
    History
    Name Last commit Last update
    data
    results
    src
    workflows
    .gitignore
    README.md

    Download Clone

    mkdir m2bsgreprod

    git clone git@etulab.univ-amu.fr:o22025448/tp1ara.git > m2bsgreprod

    Install the micromamba or equiv.

    Create a m2bsgreprod micromamba environment and install apptainer 1.3.2

    Build the apptainer image

    mkdir -p results/containers

    sudo /home/gonzalez/Software/micromamba/envs/m2bsgreprod/bin/apptainer build results/containers/m2bsgreprod.sif containers/m2bsgreprod.def

    Execute the Rscripts

    micromamba activate m2bsgreprod

    apptainer exec results/containers/m2bsgreprod.sif Rscript src/download_data.R

    apptainer exec results/containers/m2bsgreprod.sif Rscript src/tp1.R

    make