diff --git a/doc/01install.md b/doc/01install.md index 00e067c211a06ef45cc4356821abe04e692e703e..d45e460c8bb80434fd5e50bec42f4df7adf2db7b 100644 --- a/doc/01install.md +++ b/doc/01install.md @@ -18,6 +18,8 @@ export PATH=$HOME/.local/bin:$PATH export MAMBA_ROOT_PREFIX=$HOME/micromamba eval "$(micromamba shell hook -s posix)" + +source ~/.bashrc ~~~ Create a m2bsgreprod micromamba environment and install apptainer 1.3.2 @@ -30,6 +32,17 @@ micromamba activate m2bsgreprod micromamba install conda-forge::apptainer=1.3.2 ~~~ +Create a Docker image + +~~~ +cd results/containers +docker build -t Dockerfile +~~~ +Convert Docker image to SIF file + +~~~ +sudo apptainer build results/containers/m2bsgreprod3.sif results/containers/m2bsgreprod.def +~~~ diff --git a/doc/02run.md b/doc/02run.md index 836e8271a7692226ed34422df5cc327fad9151bf..155fcdbb7a1066b03be985b603f9c7591f92c59f 100644 --- a/doc/02run.md +++ b/doc/02run.md @@ -5,4 +5,4 @@ micromamba activate m2bsgreprod apptainer exec results/containers/m2bsgreprod3.sif make -f workflows/makefile ~~~ - +