From 273686c623104021d0a0be5008e54bb43611a34d Mon Sep 17 00:00:00 2001
From: SOLER Fiona <s23014817@V-PP-47-L-090.salsa.univ-amu.fr>
Date: Wed, 6 Nov 2024 17:04:52 +0100
Subject: [PATCH] installation and execution

---
 doc/01install.md | 13 +++++++++++++
 doc/02run.md     |  2 +-
 2 files changed, 14 insertions(+), 1 deletion(-)

diff --git a/doc/01install.md b/doc/01install.md
index 00e067c..d45e460 100644
--- a/doc/01install.md
+++ b/doc/01install.md
@@ -18,6 +18,8 @@ export PATH=$HOME/.local/bin:$PATH
 export MAMBA_ROOT_PREFIX=$HOME/micromamba
 
 eval "$(micromamba shell hook -s posix)"
+
+source ~/.bashrc
 ~~~
 
 Create a m2bsgreprod micromamba environment and install apptainer 1.3.2
@@ -30,6 +32,17 @@ micromamba activate m2bsgreprod
 micromamba install conda-forge::apptainer=1.3.2
 ~~~
 
+Create a Docker image 
+
+~~~
+cd results/containers
 
+docker build -t Dockerfile
+~~~
 
+Convert Docker image to SIF file
+
+~~~
+sudo apptainer build results/containers/m2bsgreprod3.sif results/containers/m2bsgreprod.def
+~~~
 
diff --git a/doc/02run.md b/doc/02run.md
index 836e827..155fcdb 100644
--- a/doc/02run.md
+++ b/doc/02run.md
@@ -5,4 +5,4 @@ micromamba activate m2bsgreprod
 
 apptainer exec results/containers/m2bsgreprod3.sif make -f workflows/makefile
 ~~~
-  
+
-- 
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