From e2fab95b87a8f4400dafa810f42e4ff7d9ede025 Mon Sep 17 00:00:00 2001
From: SOLER Fiona <s23014817@V-PP-47-L-090.salsa.univ-amu.fr>
Date: Wed, 6 Nov 2024 17:39:19 +0100
Subject: [PATCH] makefile and snakefile to use for the lab
---
dputhier/Makefile | 2 --
dputhier/Snakefile | 4 ----
2 files changed, 6 deletions(-)
diff --git a/dputhier/Makefile b/dputhier/Makefile
index 83727ad..4104260 100644
--- a/dputhier/Makefile
+++ b/dputhier/Makefile
@@ -34,5 +34,3 @@ rulegraph:
queue:
@squeue -u $$USER
-
-
diff --git a/dputhier/Snakefile b/dputhier/Snakefile
index 4541c14..92dbe67 100644
--- a/dputhier/Snakefile
+++ b/dputhier/Snakefile
@@ -24,10 +24,6 @@ SAMPLE = sorted(SAMPLE)
#SAMPLE = SAMPLE[:10]
-#toto = expand("trimmomatic/{smp}_R1.fq.gz", smp=SAMPLE)
-#print(toto)
-#sys.exit()
-
rule final:
input: expand("fastqc/{smp}_R1_fastqc.zip", smp=SAMPLE) , \
expand("trimmomatic/{smp}_R1.fq.gz", smp=SAMPLE) , \
--
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