From 22a70896445aa4d450dcc136502979a5e770f45a Mon Sep 17 00:00:00 2001
From: TRON Kelly <t19016063@V-PJ-47-066.salsa.univ-amu.fr>
Date: Wed, 23 Oct 2024 14:49:53 +0200
Subject: [PATCH] container
---
containers/Dockerfile | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
create mode 100644 containers/Dockerfile
diff --git a/containers/Dockerfile b/containers/Dockerfile
new file mode 100644
index 0000000..54b8e2a
--- /dev/null
+++ b/containers/Dockerfile
@@ -0,0 +1,30 @@
+from rocker/rstudio:4.1.3
+
+RUN apt-get update && \
+ apt-get install -y \
+ libcurl4-openssl-dev \
+ libssl-dev libssh2-1-dev \
+ libxml2-dev zlib1g-dev \
+ && \
+ R -e "install.packages(c('devtools'))"
+
+# Update the system and install necessary libraries for R packages
+RUN apt-get update && apt-get install -y \
+ libcurl4-openssl-dev \
+ libssl-dev \
+ libxml2-dev \
+ libxt-dev \
+ libgit2-dev \
+ && apt-get clean \
+ && rm -rf /var/lib/apt/lists/*
+
+# Install other R
+RUN R -e "install.packages(c('plyr', 'BiocManager'), repos='https://cran.biotools.fr')" \
+ && R -e "BiocManager::install(c('snpStats', 'SNPRelate'))"
+
+# Expose the RStudio Server port
+EXPOSE 8787
+
+# Start RStudio Server
+CMD ["/init"]
+
--
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