diff --git a/src/tp3.R b/src/tp3.R new file mode 100644 index 0000000000000000000000000000000000000000..d7c176fd6e9d9dc5270ea7042547b1e7d8df4f67 --- /dev/null +++ b/src/tp3.R @@ -0,0 +1,25 @@ +#load data +load("results/tp2/TP2_asbvg.RData") + +#fichier de sortie +output_dir = "results/tp3" +dir.create(output_dir, showWarnings = F, recursive = T) + +#library +if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") + +if (!require("snpStats", quietly = TRUE)) + BiocManager::install("snpStats") + +if (!require("doParallel", quietly = TRUE)) + BiocManager::install("doParallel") + +library(snpStats) +library(plyr) +library(GenABEL) +library(doParallel) + +rdata_path = file.path(output_dir,"TP3_asbvg.RData") +save.image(rdata_path) +