diff --git a/doc/01install.md b/doc/install
similarity index 100%
rename from doc/01install.md
rename to doc/install
diff --git a/src/.Rhistory b/src/.Rhistory
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index 0000000000000000000000000000000000000000..53e6de6c457a6a0250ff7cf903f90ba89cd26d26
--- /dev/null
+++ b/src/.Rhistory
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+# Les données analysées nécessitant beaucoup de RAM, nous allons sélectionner aléatoirement 250000 SNPs et réecrire des fichiers bed, bim, fam
+penncath_bed_path = "results/data/penncath.bed"
+penncath_bim_path = "results/data/penncath.bim"
+penncath_fam_path = "results/data/penncath.fam"
+geno <- snpStats::read.plink(penncath_bed_path, penncath_bim_path, penncath_fam_path, select.snps=sample(1:861473, 25000, replace = FALSE ), na.strings = ("-9"))
+# Les données analysées nécessitant beaucoup de RAM, nous allons sélectionner aléatoirement 250000 SNPs et réecrire des fichiers bed, bim, fam
+penncath_bed_path = "~/Bureau/project_reprod/m2reprod/results/data/penncath.bed"
+penncath_bim_path = "~/Bureau/project_reprod/m2reprod/results/data/penncath.bim"
+penncath_fam_path = "~/Bureau/project_reprod/m2reprod/results/data/penncath.fam"
+geno <- snpStats::read.plink(penncath_bed_path, penncath_bim_path, penncath_fam_path, select.snps=sample(1:861473, 25000, replace = FALSE ), na.strings = ("-9"))
diff --git a/workflows/.Rhistory b/workflows/.Rhistory
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index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/workflows/Makefile b/workflows/Makefile
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index 0000000000000000000000000000000000000000..0dfdbdd49c8e7b430d91626ef8363442da033c9c
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+++ b/workflows/Makefile
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+# Makefile 
+all : results/tp3/TP3_asbvg.RData
+
+results/tp3/TP3_asbvg.RData: results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData 
+    Rscript src/tp1.R
+    
+results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData: results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam
+	Rscript src/tp1.R
+	
+results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam:
+	Rscript src/download_data.R
+
+clean:
+	rm -rf results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam results/data/penncath.csv results/penncath.tar.gz results/data
+
+