separation regulated gene and regulated gene

src/main/java/model/genes/ConstantRegulatedGene.java → src/main/java/model/genes/ConstantGene.java

@@ -2,13 +2,13 @@ package model.genes;
 
 import model.regulators.Regulator;
 
-public class ConstantRegulatedGene implements Gene {
+public class ConstantGene implements Gene {
   private double proteinConcentration;
   private final double initialProteinConcentration;
   private final String name;
   private boolean isSignaled;
 
-  public ConstantRegulatedGene(String name, double proteinConcentration, boolean isSignaled) {
+  public ConstantGene(String name, double proteinConcentration, boolean isSignaled) {
     this.proteinConcentration = proteinConcentration;
     this.initialProteinConcentration = proteinConcentration;
     this.name = name;

src/main/java/model/network/RegulatoryNetworkDataManager.java

 package model.network;
 
 import model.events.SimulationEvent;
-import model.genes.ConstantRegulatedGene;
+import model.genes.ConstantGene;
 import model.genes.Gene;
 
 import java.io.BufferedReader;
@@ -73,16 +73,16 @@ public class RegulatoryNetworkDataManager {
     String name = tokens[1];
     double concentration = Double.parseDouble(tokens[2]);
     boolean isSignaled = Boolean.parseBoolean(tokens[3]);
-    genes.put(name, new ConstantRegulatedGene(name, concentration, isSignaled));
+    genes.put(name, new ConstantGene(name, concentration, isSignaled));
   }
 
   public RegulatoryNetwork generate() {
     List<Gene> genes = new ArrayList<>();
-    Gene x = new ConstantRegulatedGene("X", 3, true);
+    Gene x = new ConstantGene("X", 3, true);
     genes.add(x);
-    Gene y = new ConstantRegulatedGene("Y", 2, true);
+    Gene y = new ConstantGene("Y", 2, true);
     genes.add(y);
-    Gene z = new ConstantRegulatedGene("Z", 4, false);
+    Gene z = new ConstantGene("Z", 4, false);
     genes.add(z);
     List<SimulationEvent> simulationEvents = new ArrayList<>();
     return new RegulatoryNetwork(genes, simulationEvents, 0.01, 20);

src/test/java/model/genes/ConstantRegulatedGeneTest.java → src/test/java/model/genes/ConstantGeneTest.java

@@ -5,18 +5,18 @@ import org.junit.jupiter.api.Test;
 
 import static org.assertj.core.api.Assertions.*;
 
-public class ConstantRegulatedGeneTest {
+public class ConstantGeneTest {
   public static final double EPSILON = 0.0000001;
 
-  private ConstantRegulatedGene geneX;
-  private ConstantRegulatedGene geneY;
-  private ConstantRegulatedGene geneZ;
+  private ConstantGene geneX;
+  private ConstantGene geneY;
+  private ConstantGene geneZ;
 
   @BeforeEach
   void initializeGenes(){
-    geneX = new ConstantRegulatedGene("X", 1, true);
-    geneY = new ConstantRegulatedGene("Y", 2, false);
-    geneZ = new ConstantRegulatedGene("Z", 3, false);
+    geneX = new ConstantGene("X", 1, true);
+    geneY = new ConstantGene("Y", 2, false);
+    geneZ = new ConstantGene("Z", 3, false);
   }
 
   @Test