01install.md
#Install the micromamba
curl -L https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba
mkdir -p $HOME/.local/bin
mv bin/micromamba $HOME/.local/bin/
mkdir -p $HOME/micromamba
#Add these lines to ~/.bashrc
export PATH=HOME/.local/bin:PATH
export MAMBA_ROOT_PREFIX=$HOME/micromamba
eval "$(micromamba shell hook -s posix)"
#Create a m2bsgreprod micromamba environment and install apptainer 1.3.2
micromamba create --name m2bsgreprod python=3.12 -c conda-forge
micromamba activate m2bsgreprod
micromamba install conda-forge::apptainer=1.3.2
#Build the apptainer image
mkdir -p results/containers
sudo /home/gonzalez/Software/micromamba/envs/m2bsgreprod/bin/apptainer build results/containers/m2bsgreprod.sif containers/m2bsgreprod.def