Ajout d'explications au niveau des scripts

Doc/01install.md

 #Install the micromamba
 
+#Download and extract micromamba:
+
 curl -L https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba
 
 mkdir -p $HOME/.local/bin
 
 mv bin/micromamba $HOME/.local/bin/
 
+#Create the root directory for micromamba:
+
 mkdir -p $HOME/micromamba
 
-#Add these lines to ~/.bashrc
+#Add the following lines to your ~/.bashrc to configure the environment:
 
 export PATH=$HOME/.local/bin:$PATH
 
@@ -16,15 +20,17 @@ export MAMBA_ROOT_PREFIX=$HOME/micromamba
 
 eval "$(micromamba shell hook -s posix)"
 
-#Create a m2bsgreprod micromamba environment and install apptainer 1.3.2
+#Create a new micromamba environment named m2bsgreprod with Python 3.12:
 
 micromamba create --name m2bsgreprod python=3.12  -c conda-forge
 
 micromamba activate m2bsgreprod
 
+#Install Apptainer 1.3.2:
+
 micromamba install conda-forge::apptainer=1.3.2
 
-#Build the apptainer image
+#Create the output directory and build the apptainer image:
 
 mkdir -p results/containers
 

Doc/02run.md

-#Execute the Rscripts
+#Execution guide
+
+#Activate the Environment
 
 micromamba activate m2bsgreprod
 
+#Use Apptainer to execute the make command inside the container and run the Makefile:
+
 apptainer exec results/containers/m2bsgreprod3.sif make -f workflows/makefile