Download Clone
mkdir m2bsgreprod
git clone git@etulab.univ-amu.fr:o22025448/tp1ara.git > m2bsgreprod
Install the micromamba or equiv.
Create a m2bsgreprod micromamba environment and install apptainer 1.3.2
Build the apptainer image
mkdir -p results/containers
sudo /home/gonzalez/Software/micromamba/envs/m2bsgreprod/bin/apptainer build results/containers/m2bsgreprod.sif containers/m2bsgreprod.def
Execute the Rscripts
micromamba activate m2bsgreprod
apptainer exec results/containers/m2bsgreprod.sif Rscript src/download_data.R
apptainer exec results/containers/m2bsgreprod.sif Rscript src/tp1.R
make