Dockerfile

from rocker/rstudio:4.1.3

RUN apt-get update && \
  apt-get install -y \
  libcurl4-openssl-dev \
  libssl-dev libssh2-1-dev \
  libxml2-dev zlib1g-dev \
  && \
  R -e "install.packages(c('devtools'))"

# Update the system and install necessary libraries for R packages
RUN apt-get update && apt-get install -y \
    libcurl4-openssl-dev \
    libssl-dev \
    libxml2-dev \
    libxt-dev \
    libgit2-dev \
    && apt-get clean \
    && rm -rf /var/lib/apt/lists/*

# Install other R
RUN R -e "install.packages(c('plyr', 'BiocManager'), repos='https://cran.biotools.fr')" \
    && R -e "BiocManager::install(c('snpStats', 'SNPRelate'))"

# Expose the RStudio Server port
EXPOSE 8787

# Start RStudio Server
CMD ["/init"]