Makefile and Snakefile for Denis Puthier's TP

dputhier/Makefile

@@ -44,3 +44,4 @@ rulegraph:
 
 queue:
 	@squeue -u $$USER
+

dputhier/Snakefile

@@ -24,10 +24,6 @@ SAMPLE = sorted(SAMPLE)
 
 #SAMPLE = SAMPLE[:10]
 
-#bob = expand("trimmomatic/{smp}_R1.fq.gz", smp=SAMPLE)
-#print(bob)
-#sys.exit()
-
 rule final:
 	input: expand("fastqc_trim/{smp}_R1_fastqc.zip", smp=SAMPLE), \
 			expand("star/{smp}.bam.bai", smp=SAMPLE), \