workflow

workflow/makefile

+all: results/tp4/TP4_asbvg.RData
+	
+results/tp4/TP4_asbvg.RData: results/tp3/TP3_asbvg.RData
+	Rscript src/tp4.R
+	
+results/tp3/TP3_asbvg.RData: results/tp2/TP2_asbvg.RData
+	Rscript src/tp3.R
+	
+results/tp2/TP2_asbvg.RData: results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData
+	Rscript src/tp2.R
+	
+results/tp1/plink_base.bed results/tp1/plink_base.bim results/tp1/plink_base.fam results/tp1/TP1_asbvg.RData: results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam
+	Rscript src/tp1.R
+	
+results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam:
+	Rscript src/download_data.R
+
+clean:
+	rm -rf results/data/penncath.bed results/data/penncath.bim results/data/penncath.fam results/data/penncath.csv results/penncath.tar.gz results/data
+