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Commit e2fab95b authored by SOLER Fiona's avatar SOLER Fiona
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makefile and snakefile to use for the lab

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dputhier/Makefile
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View file @ e2fab95b
......@@ -34,5 +34,3 @@ rulegraph:
queue:
@squeue -u $$USER
dputhier/Snakefile
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View file @ e2fab95b
......@@ -24,10 +24,6 @@ SAMPLE = sorted(SAMPLE)
#SAMPLE = SAMPLE[:10]
#toto = expand("trimmomatic/{smp}_R1.fq.gz", smp=SAMPLE)
#print(toto)
#sys.exit()
rule final:
input: expand("fastqc/{smp}_R1_fastqc.zip", smp=SAMPLE) , \
expand("trimmomatic/{smp}_R1.fq.gz", smp=SAMPLE) , \
......
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